Milan Simonović

Milan Simonovic

 

Institute of Molecular Life Sciences
University of Zurich
Y55-L-56
Winterthurerstrasse 190
CH-8057 Zurich
Switzerland
Phone: +41 44 63 53149
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Current projects

Publications

Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res 41, D808–15 (2013). doi: 10.1093/nar/gks1094

Wang M, Weiss M, Simonovic M, Haertinger G, Schrimpf SP, Hengartner MO, von Mering C. PaxDb, a database of protein abundance averages across all three domains of life. Mol Cell Proteomics 11, 492–500 (2012). doi: 10.1074/mcp.O111.014704

Aranda B, Blankenburg H, Kerrien S, Brinkman FSL, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock REW, Isserlin R, Jimenez RC, Kerssemakers J, Khadake J, Lynn DJ, Michaut M, O'Kelly G, Ono K, Orchard S, Prieto C, Razick S, Rigina O, Salwinski L, Simonovic M, Velankar S, Winter A, Wu G, Bader GD, Cesareni G, Donaldson IM, Eisenberg D, Kleywegt GJ, Overington J, Ricard-Blum S, Tyers M, Albrecht M, Hermjakob H. PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat Methods 8, 528–529 (2011). doi: 10.1038/nmeth.1637

Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, von Mering C. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res 39, D561–8 (2011). doi: 10.1093/nar/gkq973

Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, Bork P, von Mering C. STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 37, D412–D416 (2009). doi: 10.1093/nar/gkn760

Dzunic MZ, Kljajic G, Simonovic M, Semantic Web Mining Technologies Survey, YUINFO, (2008) (pdf)

Short CV

  • since 2008: Scientific programmer at Swiss Institute of Bioinformatics
  • 2008: Master of Science, Computer Science.
  • 2006 - 2008: Software engineer at YoungCulture.
  • 2006: System administrator at YoungCulture.